Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28041

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 286

Length: 477
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.17


Found at i:100 original size:36 final size:36

Alignment explanation


    Indices: 60--141  Score: 155
    Period size: 36  Copynumber: 2.3  Consensus size: 36

         50 TGAAAGACCC

                     *                          
         60 AGAACCCAAGCAACCCTCGGAAGAACCCCCAAATCA
          1 AGAACCCAAACAACCCTCGGAAGAACCCCCAAATCA

                                                
         96 AGAACCCAAACAACCCTCGGAAGAACCCCCAAATCA
          1 AGAACCCAAACAACCCTCGGAAGAACCCCCAAATCA

                      
        132 AGAACCCAAA
          1 AGAACCCAAA

        142 GTAGAAGTAG


Statistics
Matches: 45,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  36   45  1.00

ACGTcount: A:0.45, C:0.38, G:0.12, T:0.05


Consensus pattern (36 bp):   
AGAACCCAAACAACCCTCGGAAGAACCCCCAAATCA
Done.