Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18599

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 412

Length: 687
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26


Found at i:529 original size:9 final size:9

Alignment explanation


    Indices: 503--551  Score: 53
    Period size: 9  Copynumber: 5.4  Consensus size: 9

        493 ATATTTTGTG

                 *   
        503 ATGATAATC
          1 ATGATCATC

              * *    
        512 ATCACCATC
          1 ATGATCATC

                     
        521 ATGATCATC
          1 ATGATCATC

                   * 
        530 ATGATCACC
          1 ATGATCATC

                    *
        539 ATGATCATG
          1 ATGATCATC

                
        548 ATGA
          1 ATGA

        552 AGGTGGTAAT


Statistics
Matches: 32,  Mismatches: 8, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
   9   32  1.00

ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29


Consensus pattern (9 bp):   
ATGATCATC

Done.