Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30423

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4301
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27


Found at i:3460 original size:21 final size:21

Alignment explanation


    Indices: 3436--3476  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3426 CCACCTTTTC

                      *          
       3436 CATCCCCACCTCCACCTCCAA
          1 CATCCCCACCGCCACCTCCAA

                *   *           
       3457 CATCTCCATCGCCACCTCCA
          1 CATCCCCACCGCCACCTCCA

       3477 CCTCCTCCGC


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.22, C:0.59, G:0.02, T:0.17


Consensus pattern (21 bp):   
CATCCCCACCGCCACCTCCAA
Done.