Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40866

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2757
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:1732 original size:3 final size:3

Alignment explanation


    Indices: 1724--1797  Score: 114
    Period size: 3  Copynumber: 24.7  Consensus size: 3

       1714 AGTGGATCAT

                                             *                          
       1724 ATG ATG ATG ATG ATG ATTG -TG ATG GTG ATG ATG ATG ATG ATG ATG
          1 ATG ATG ATG ATG ATG A-TG ATG ATG ATG ATG ATG ATG ATG ATG ATG

                         *                        
       1769 ATG ATG ATG AGG ATG ATG ATG ATG ATG AT
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT

       1798 ACCAATAATG


Statistics
Matches: 65,  Mismatches: 4, Indels: 4
        0.89            0.05        0.05

Matches are distributed among these distances:
   2    2  0.03
   3   61  0.94
   4    2  0.03

ACGTcount: A:0.31, C:0.00, G:0.35, T:0.34


Consensus pattern (3 bp):   
ATG

Done.