Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01523

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 298

Length: 498
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28


Found at i:233 original size:3 final size:3

Alignment explanation


    Indices: 219--248  Score: 51
    Period size: 3  Copynumber: 10.0  Consensus size: 3

        209 TCAAACAAGG

                  *                                
        219 TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

        249 GTCAAGGCCT


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70


Consensus pattern (3 bp):   
TTC

Done.