Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07016

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 419

Length: 699
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26


Found at i:617 original size:15 final size:15

Alignment explanation


    Indices: 597--630  Score: 59
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        587 AGGAGGAGTG

                    *      
        597 CAACAACATCAACAT
          1 CAACAACAACAACAT

                           
        612 CAACAACAACAACAT
          1 CAACAACAACAACAT

                
        627 CAAC
          1 CAAC

        631 TCTTCCAATT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.56, C:0.35, G:0.00, T:0.09


Consensus pattern (15 bp):   
CAACAACAACAACAT
Done.