Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02109

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 204
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36


Found at i:100 original size:24 final size:24

Alignment explanation


    Indices: 68--118  Score: 102
    Period size: 24  Copynumber: 2.1  Consensus size: 24

         58 TGTTGAAGAT

                                    
         68 TTTCCGGTGGTTTTGATATCAATG
          1 TTTCCGGTGGTTTTGATATCAATG

                                    
         92 TTTCCGGTGGTTTTGATATCAATG
          1 TTTCCGGTGGTTTTGATATCAATG

               
        116 TTT
          1 TTT

        119 TCACGAAAGT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.16, C:0.12, G:0.24, T:0.49


Consensus pattern (24 bp):   
TTTCCGGTGGTTTTGATATCAATG
Done.