Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30575

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 284

Length: 474
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23


Found at i:408 original size:21 final size:20

Alignment explanation


    Indices: 384--428  Score: 72
    Period size: 21  Copynumber: 2.2  Consensus size: 20

        374 AACTTAGAGT

                                 
        384 GGAGGCAGCAACGAGGGAGGC
          1 GGAGGCAGCAACGAGGGA-GC

                      *         
        405 GGAGGCAGCAGCGAGGGAGC
          1 GGAGGCAGCAACGAGGGAGC

                
        425 GGAG
          1 GGAG

        429 CAGAACAAGA


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  20    6  0.26
  21   17  0.74

ACGTcount: A:0.27, C:0.18, G:0.56, T:0.00


Consensus pattern (20 bp):   
GGAGGCAGCAACGAGGGAGC
Done.