Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18988

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2133
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26


Found at i:190 original size:12 final size:12

Alignment explanation


    Indices: 169--207  Score: 51
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        159 TGACGTGGCA

                 *      
        169 GAGGAGGACGAT
          1 GAGGACGACGAT

                       *
        181 GAGGACGACGAA
          1 GAGGACGACGAT

                 *      
        193 GAGGATGACGAT
          1 GAGGACGACGAT

               
        205 GAG
          1 GAG

        208 CTTTATGGCG


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  12   23  1.00

ACGTcount: A:0.36, C:0.10, G:0.46, T:0.08


Consensus pattern (12 bp):   
GAGGACGACGAT
Done.