Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35075

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 838

Length: 1398
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27


Found at i:1346 original size:21 final size:21

Alignment explanation


    Indices: 1292--1335  Score: 79
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1282 TTGTTGCACC

                     *           
       1292 AGAATGAGAGGCTGAGATTGG
          1 AGAATGAGAAGCTGAGATTGG

                                 
       1313 AGAATGAGAAGCTGAGATTGG
          1 AGAATGAGAAGCTGAGATTGG

              
       1334 AG
          1 AG

       1336 TTAGAGAAGC


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.36, C:0.05, G:0.41, T:0.18


Consensus pattern (21 bp):   
AGAATGAGAAGCTGAGATTGG
Done.