Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05673

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3056
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:2721 original size:28 final size:28

Alignment explanation


    Indices: 2681--2736  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       2671 CACAAAGTAA

                                        
       2681 ATAATCTGCCATTATTTGAATAAGCTTC
          1 ATAATCTGCCATTATTTGAATAAGCTTC

                                        
       2709 ATAATCTGCCATTATTTGAATAAGCTTC
          1 ATAATCTGCCATTATTTGAATAAGCTTC

       2737 CAATAGGTCA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39


Consensus pattern (28 bp):   
ATAATCTGCCATTATTTGAATAAGCTTC
Done.