Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06629

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1782
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27


Found at i:56 original size:16 final size:17

Alignment explanation


    Indices: 35--66  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

         25 AGAAAGAAGG

                             
         35 ACAAAGAAAAG-GGGAA
          1 ACAAAGAAAAGAGGGAA

                            
         51 ACAAAGAAAAGAGGGA
          1 ACAAAGAAAAGAGGGA

         67 CCATCTCTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.62, C:0.06, G:0.31, T:0.00


Consensus pattern (17 bp):   
ACAAAGAAAAGAGGGAA
Done.