Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17091

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2247
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28


Found at i:2041 original size:3 final size:3

Alignment explanation


    Indices: 2033--2057  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

       2023 CTAGACTATT

                                             
       2033 ATG ATG ATG ATG ATG ATG ATG ATG A
          1 ATG ATG ATG ATG ATG ATG ATG ATG A

       2058 CGATCAACAG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32


Consensus pattern (3 bp):   
ATG

Done.