Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29178

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 333
ACGTcount: A:0.20, C:0.08, G:0.43, T:0.29


Found at i:117 original size:21 final size:21

Alignment explanation


    Indices: 93--142  Score: 64
    Period size: 21  Copynumber: 2.4  Consensus size: 21

         83 GTGTAGGAAA

                                 
         93 AGGAGGTGGTGGTGGAGGAGG
          1 AGGAGGTGGTGGTGGAGGAGG

                  **          *  
        114 AGGAGGAAGTGGTGGAGGTGG
          1 AGGAGGTGGTGGTGGAGGAGG

               *    
        135 AGGTGGTG
          1 AGGAGGTG

        143 CTAATGGTTT


Statistics
Matches: 23,  Mismatches: 6, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.20, C:0.00, G:0.64, T:0.16


Consensus pattern (21 bp):   
AGGAGGTGGTGGTGGAGGAGG
Done.