Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15865

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 286

Length: 477
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25


Found at i:443 original size:81 final size:81

Alignment explanation


    Indices: 305--457  Score: 218
    Period size: 81  Copynumber: 1.9  Consensus size: 81

        295 ATCGAAGTTC

                                                                *     *    * 
        305 AGAGAAAAATCAAGTTATTAGGCAAGGAGTGCTGGTATAATCTGGAACCAGACCAACCTACAGGC
          1 AGAGAAAAATCAAGTTATTAGGCAAGGAGTGCTGGTATAATCTGGAACCAGAACAACCAACAGAC

                            
        370 GCAACAGCACAAGATA
         66 GCAACAGCACAAGATA

                       **      *                   **                        
        386 AGAGAAAAATCCTGTTATTTGGCAAGGAGTGC-GGCTATTTTCTGGAACCAGAACAACCAACAGA
          1 AGAGAAAAATCAAGTTATTAGGCAAGGAGTGCTGG-TATAATCTGGAACCAGAACAACCAACAGA

                    
        450 CGCAACAG
         65 CGCAACAG

        458 GAGAAGTTAT


Statistics
Matches: 63,  Mismatches: 8, Indels: 2
        0.86            0.11        0.03

Matches are distributed among these distances:
  80    2  0.03
  81   61  0.97

ACGTcount: A:0.39, C:0.20, G:0.24, T:0.18


Consensus pattern (81 bp):   
AGAGAAAAATCAAGTTATTAGGCAAGGAGTGCTGGTATAATCTGGAACCAGAACAACCAACAGAC
GCAACAGCACAAGATA
Done.