Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17046

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 351

Length: 585
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23


Found at i:538 original size:21 final size:21

Alignment explanation


    Indices: 512--553  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        502 CAACTTAGAA

                    *            
        512 CGGAGGCAGCAGCAAGGGAGG
          1 CGGAGGCAACAGCAAGGGAGG

                         *       
        533 CGGAGGCAACAGCGAGGGAGG
          1 CGGAGGCAACAGCAAGGGAGG

        554 TAGAGCAGAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.29, C:0.19, G:0.52, T:0.00


Consensus pattern (21 bp):   
CGGAGGCAACAGCAAGGGAGG
Done.