Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25387

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 993

Length: 1656
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25


Found at i:190 original size:21 final size:21

Alignment explanation


    Indices: 166--212  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        156 AATTGATCTA

                    *        *   
        166 AAAAAGAGCAAGAAAGACAAG
          1 AAAAAGAGAAAGAAAGAAAAG

                  *              
        187 AAAAAGCGAAAGAAAGAAAAG
          1 AAAAAGAGAAAGAAAGAAAAG

            *    
        208 GAAAA
          1 AAAAA

        213 CAACGAAGGT


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.70, C:0.06, G:0.23, T:0.00


Consensus pattern (21 bp):   
AAAAAGAGAAAGAAAGAAAAG
Done.