Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17570

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1107
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23


Found at i:603 original size:111 final size:111

Alignment explanation


    Indices: 409--632  Score: 448
    Period size: 111  Copynumber: 2.0  Consensus size: 111

        399 AGGCCAATGC

                                                                             
        409 GGATGCTGTTGGGCGTTCTCGGCCGTGGCAGCCATGGAAGGGGTTACTAAATTGACAACAGGAAA
          1 GGATGCTGTTGGGCGTTCTCGGCCGTGGCAGCCATGGAAGGGGTTACTAAATTGACAACAGGAAA

                                                          
        474 GTTAATTTCGTTGTCCGAGCAGGAACTGGTGGACTGTGACACCAAG
         66 GTTAATTTCGTTGTCCGAGCAGGAACTGGTGGACTGTGACACCAAG

                                                                             
        520 GGATGCTGTTGGGCGTTCTCGGCCGTGGCAGCCATGGAAGGGGTTACTAAATTGACAACAGGAAA
          1 GGATGCTGTTGGGCGTTCTCGGCCGTGGCAGCCATGGAAGGGGTTACTAAATTGACAACAGGAAA

                                                          
        585 GTTAATTTCGTTGTCCGAGCAGGAACTGGTGGACTGTGACACCAAG
         66 GTTAATTTCGTTGTCCGAGCAGGAACTGGTGGACTGTGACACCAAG

              
        631 GG
          1 GG

        633 TGAGGATCAA


Statistics
Matches: 113,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 111  113  1.00

ACGTcount: A:0.24, C:0.19, G:0.34, T:0.23


Consensus pattern (111 bp):   
GGATGCTGTTGGGCGTTCTCGGCCGTGGCAGCCATGGAAGGGGTTACTAAATTGACAACAGGAAA
GTTAATTTCGTTGTCCGAGCAGGAACTGGTGGACTGTGACACCAAG
Done.