Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19517

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2304
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.24


Found at i:2139 original size:6 final size:6

Alignment explanation


    Indices: 2128--2153  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       2118 GAGGGTGAAC

                                          
       2128 GAAAGG GAAAGG GAAAGG GAAAGG GA
          1 GAAAGG GAAAGG GAAAGG GAAAGG GA

       2154 GTCGATGACA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (6 bp):   
GAAAGG

Done.