Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02999

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 421

Length: 702
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26


Found at i:130 original size:3 final size:3

Alignment explanation


    Indices: 111--150  Score: 62
    Period size: 3  Copynumber: 13.3  Consensus size: 3

        101 ATGAAGTTTG

                     *      *                                    
        111 TGA TGA TCA TGA AGA TGA TGA TGA TGA TGA TGA TGA TGA T
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T

        151 AAGAAAGATG


Statistics
Matches: 33,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.35, C:0.03, G:0.30, T:0.33


Consensus pattern (3 bp):   
TGA

Done.