Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23193

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 639

Length: 1065
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27


Found at i:283 original size:28 final size:27

Alignment explanation


    Indices: 227--281  Score: 69
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        217 CCGCATGGTA

                                       
        227 TAAAATACAATGGAACAATCCAGGGTT
          1 TAAAATACAATGGAACAATCCAGGGTT

                   *                     
        254 TAAAATATATATGGAA-AA-CCGAGGGTT
          1 TAAAATACA-ATGGAACAATCC-AGGGTT

             
        281 T
          1 T

        282 TAGAGGAATG


Statistics
Matches: 25,  Mismatches: 1, Indels: 4
        0.83            0.03        0.13

Matches are distributed among these distances:
  26    2  0.08
  27   17  0.68
  28    6  0.24

ACGTcount: A:0.44, C:0.11, G:0.20, T:0.25


Consensus pattern (27 bp):   
TAAAATACAATGGAACAATCCAGGGTT
Done.