Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26332

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 873

Length: 1455
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27


Found at i:1437 original size:25 final size:25

Alignment explanation


    Indices: 1403--1455  Score: 106
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       1393 AAAGATGATT

                                     
       1403 TAATTTTAATTCCAACCACTCATGC
          1 TAATTTTAATTCCAACCACTCATGC

                                     
       1428 TAATTTTAATTCCAACCACTCATGC
          1 TAATTTTAATTCCAACCACTCATGC

               
       1453 TAA
          1 TAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   28  1.00

ACGTcount: A:0.34, C:0.26, G:0.04, T:0.36


Consensus pattern (25 bp):   
TAATTTTAATTCCAACCACTCATGC
Done.