Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18553

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 289

Length: 483
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24


Found at i:239 original size:18 final size:18

Alignment explanation


    Indices: 216--251  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        206 ATGAAAACGA

                              
        216 CAACGATGGGTTCAAGAC
          1 CAACGATGGGTTCAAGAC

                              
        234 CAACGATGGGTTCAAGAC
          1 CAACGATGGGTTCAAGAC

        252 TCCTACTTCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.33, C:0.22, G:0.28, T:0.17


Consensus pattern (18 bp):   
CAACGATGGGTTCAAGAC
Done.