Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17316

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3006
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:533 original size:87 final size:87

Alignment explanation


    Indices: 424--605  Score: 319
    Period size: 87  Copynumber: 2.1  Consensus size: 87

        414 CAGTTCGGAA

                                        *                                  * 
        424 GATGAAGTCGAAGAGACGCCAAGCCATGGCATTGCCAAAAGAAAGGCTACTGAGGTCGAGTTCGT
          1 GATGAAGTCGAAGAGACGCCAAGCCATGACATTGCCAAAAGAAAGGCTACTGAGGTCGAGTTCCT

                                  
        489 TGGGGAGAATGGTTCCACTGTC
         66 TGGGGAGAATGGTTCCACTGTC

                          *                                         *        
        511 GATGAAGTCGAAGATACGCCAAGCCATGACATTGCCAAAAGAAAGGCTACTGAGGTTGAGTTCCT
          1 GATGAAGTCGAAGAGACGCCAAGCCATGACATTGCCAAAAGAAAGGCTACTGAGGTCGAGTTCCT

                                  
        576 TGGGGAGAATGGTTCCACTGTC
         66 TGGGGAGAATGGTTCCACTGTC

              *     
        598 GACGAAGT
          1 GATGAAGT

        606 TGTAATGAAG


Statistics
Matches: 90,  Mismatches: 5, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  87   90  1.00

ACGTcount: A:0.30, C:0.19, G:0.31, T:0.20


Consensus pattern (87 bp):   
GATGAAGTCGAAGAGACGCCAAGCCATGACATTGCCAAAAGAAAGGCTACTGAGGTCGAGTTCCT
TGGGGAGAATGGTTCCACTGTC
Done.