Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22585

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 959

Length: 1599
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31


Found at i:242 original size:20 final size:21

Alignment explanation


    Indices: 204--242  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        194 ATTTGCCTCC

                                 
        204 CTATCTAAGATCATGTTTCCT
          1 CTATCTAAGATCATGTTTCCT

                          *    
        225 CTATCTAAG-TCATTTTTC
          1 CTATCTAAGATCATGTTTC

        243 AGAAGATTAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    8  0.47
  21    9  0.53

ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46


Consensus pattern (21 bp):   
CTATCTAAGATCATGTTTCCT
Done.