Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29692

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 381

Length: 636
ACGTcount: A:0.38, C:0.17, G:0.32, T:0.13


Found at i:296 original size:3 final size:3

Alignment explanation


    Indices: 280--321  Score: 50
    Period size: 3  Copynumber: 14.3  Consensus size: 3

        270 GGAAGAAGGT

                 *                              *        *           
        280 GAA GGA GAA G-A GAA GAA GAA GAA GAA AAA GAA GGA GAA GAA G
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G

        322 GGACTGGAAG


Statistics
Matches: 32,  Mismatches: 6, Indels: 2
        0.80            0.15        0.05

Matches are distributed among these distances:
   2    2  0.06
   3   30  0.94

ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00


Consensus pattern (3 bp):   
GAA

Done.