Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33050

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3828
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:21 original size:6 final size:6

Alignment explanation


    Indices: 12--56  Score: 90
    Period size: 6  Copynumber: 7.5  Consensus size: 6

          2 TGGTTGATGT

                                                                
         12 TGAGGC TGAGGC TGAGGC TGAGGC TGAGGC TGAGGC TGAGGC TGA
          1 TGAGGC TGAGGC TGAGGC TGAGGC TGAGGC TGAGGC TGAGGC TGA

         57 TGAGGTGTCA


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   39  1.00

ACGTcount: A:0.18, C:0.16, G:0.49, T:0.18


Consensus pattern (6 bp):   
TGAGGC

Done.