Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18557

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2193
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26


Found at i:451 original size:27 final size:27

Alignment explanation


    Indices: 421--488  Score: 82
    Period size: 27  Copynumber: 2.5  Consensus size: 27

        411 AGTTTCAGGT

                     * *           *   
        421 TCGGGTCCCTTGGAAAGAGGGTTTATG
          1 TCGGGTCCCATCGAAAGAGGGTTCATG

                    *     *            
        448 TCGGGTCCGATCGAGAGAGGGTTCATG
          1 TCGGGTCCCATCGAAAGAGGGTTCATG

                     *    
        475 TCGGGTCCCCTCGA
          1 TCGGGTCCCATCGA

        489 TAATGTTAAT


Statistics
Matches: 34,  Mismatches: 7, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  27   34  1.00

ACGTcount: A:0.16, C:0.22, G:0.37, T:0.25


Consensus pattern (27 bp):   
TCGGGTCCCATCGAAAGAGGGTTCATG
Done.