Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32575

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2157
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29


Found at i:1141 original size:18 final size:19

Alignment explanation


    Indices: 1107--1146  Score: 55
    Period size: 18  Copynumber: 2.2  Consensus size: 19

       1097 ATGCACTGGC

                      *      * 
       1107 AATCAAATCTGAAGTCCCT
          1 AATCAAATCTCAAGTCCAT

                               
       1126 AATCAAAT-TCAAGTCCAT
          1 AATCAAATCTCAAGTCCAT

               
       1144 AAT
          1 AAT

       1147 GCCCTGATTG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  18   11  0.58
  19    8  0.42

ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28


Consensus pattern (19 bp):   
AATCAAATCTCAAGTCCAT
Done.