Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02343

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 988

Length: 1647
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27


Found at i:103 original size:3 final size:3

Alignment explanation


    Indices: 95--120  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

         85 GCGGAAGCTA

                                              
         95 GCG GCG GCG GCG GCG GCG GCG GCG GC
          1 GCG GCG GCG GCG GCG GCG GCG GCG GC

        121 TTCTGGTCTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.00, C:0.35, G:0.65, T:0.00


Consensus pattern (3 bp):   
GCG

Done.