Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21139

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 718

Length: 1197
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25


Found at i:1055 original size:6 final size:6

Alignment explanation


    Indices: 1046--1071  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       1036 CACTCACAGA

                                          
       1046 AGCATC AGCATC AGCATC AGCATC AG
          1 AGCATC AGCATC AGCATC AGCATC AG

       1072 TTTGCACCAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.35, C:0.31, G:0.19, T:0.15


Consensus pattern (6 bp):   
AGCATC

Done.