Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18423

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1977
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28


Found at i:300 original size:57 final size:57

Alignment explanation


    Indices: 232--344  Score: 183
    Period size: 57  Copynumber: 2.0  Consensus size: 57

        222 TTTACGTCCT

                                      *  *                   *        
        232 GTATCACGTGGCCCGGCTCAAGGAGTTTCGGAGAAAACGAGC-GGGATTTGGGCCGGC
          1 GTATCACGTGGCCCGGCTCAAGGAGTATCAGAGAAAACGAGCAGGG-TTAGGGCCGGC

                                                                    
        289 GTATCACGTGGCCCGGCTCAAGGAGTATCAGAGAAAACGAGCAGGGTTAGGGCCGG
          1 GTATCACGTGGCCCGGCTCAAGGAGTATCAGAGAAAACGAGCAGGGTTAGGGCCGG

        345 TGTCCCTAGG


Statistics
Matches: 52,  Mismatches: 3, Indels: 2
        0.91            0.05        0.04

Matches are distributed among these distances:
  57   49  0.94
  58    3  0.06

ACGTcount: A:0.24, C:0.22, G:0.38, T:0.16


Consensus pattern (57 bp):   
GTATCACGTGGCCCGGCTCAAGGAGTATCAGAGAAAACGAGCAGGGTTAGGGCCGGC
Done.