Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10605

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2295
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.29


Found at i:849 original size:21 final size:21

Alignment explanation


    Indices: 809--849  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        799 CCAACTGTAT

                   *     *       
        809 ATTTGGCTAATGATCGACCTA
          1 ATTTGGCAAATGAACGACCTA

                           *    
        830 ATTTGGCAAATGAACTACCT
          1 ATTTGGCAAATGAACGACCT

        850 CTAATGTCTT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32


Consensus pattern (21 bp):   
ATTTGGCAAATGAACGACCTA
Done.