Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29916

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 552

Length: 921
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24


Found at i:823 original size:15 final size:15

Alignment explanation


    Indices: 803--833  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        793 GATGAAGAAT

                           
        803 ATTATTACGATGAAG
          1 ATTATTACGATGAAG

                   *       
        818 ATTATTATGATGAAG
          1 ATTATTACGATGAAG

             
        833 A
          1 A

        834 CGACGACGAC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.42, C:0.03, G:0.19, T:0.35


Consensus pattern (15 bp):   
ATTATTACGATGAAG

Found at i:905 original size:18 final size:18

Alignment explanation


    Indices: 884--918  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        874 GAATATAATG

                      *       
        884 ATGAGAAAGATAAGAAAA
          1 ATGAGAAAGAAAAGAAAA

                             
        902 ATGAGAAAGAAAAGAAA
          1 ATGAGAAAGAAAAGAAA

        919 TAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.69, C:0.00, G:0.23, T:0.09


Consensus pattern (18 bp):   
ATGAGAAAGAAAAGAAAA
Done.