Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30460

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1176
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22


Found at i:469 original size:24 final size:24

Alignment explanation


    Indices: 440--512  Score: 101
    Period size: 24  Copynumber: 3.0  Consensus size: 24

        430 AACGACTCAT

                     *              
        440 CTGGAAGAAACAGTCATGTCAGCA
          1 CTGGAAGAAGCAGTCATGTCAGCA

                            *  *    
        464 CTGGAAGAAGCAGTCACGTAAGCA
          1 CTGGAAGAAGCAGTCATGTCAGCA

                         *    *     
        488 CTGGAAGAAGCAGCCATGGCAGCA
          1 CTGGAAGAAGCAGTCATGTCAGCA

             
        512 C
          1 C

        513 AATTACACTT


Statistics
Matches: 42,  Mismatches: 7, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  24   42  1.00

ACGTcount: A:0.36, C:0.23, G:0.29, T:0.12


Consensus pattern (24 bp):   
CTGGAAGAAGCAGTCATGTCAGCA
Done.