Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09224

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 403

Length: 673
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23


Found at i:107 original size:15 final size:15

Alignment explanation


    Indices: 87--122  Score: 54
    Period size: 15  Copynumber: 2.4  Consensus size: 15

         77 TTCAGATGCT

                           
         87 GATGAAGAAGAGGAG
          1 GATGAAGAAGAGGAG

                       *  *
        102 GATGAAGAAGATGAT
          1 GATGAAGAAGAGGAG

                  
        117 GATGAA
          1 GATGAA

        123 TTCGACAGTG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.47, C:0.00, G:0.39, T:0.14


Consensus pattern (15 bp):   
GATGAAGAAGAGGAG
Done.