Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20275

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 457

Length: 762
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23


Found at i:617 original size:105 final size:105

Alignment explanation


    Indices: 435--645  Score: 377
    Period size: 105  Copynumber: 2.0  Consensus size: 105

        425 GTGATGAAGA

                      *                                            *         
        435 GGAAAAGAAAGATCAAACTGATGATGCCAACAAGAAAGCAGCAGATGAAAGCAATGAGAATGGCA
          1 GGAAAAGAAAAATCAAACTGATGATGCCAACAAGAAAGCAGCAGATGAAAGCAATAAGAATGGCA

                                                    
        500 AGGAATATTCGTCCACGCCATCCATGCCCCAAAACAATCT
         66 AGGAATATTCGTCCACGCCATCCATGCCCCAAAACAATCT

                           *                   *                             
        540 GGAAAAGAAAAATCAGACTGATGATGCCAACAAGAGAGCAGCAGATGAAAGCAATAAGAATGGCA
          1 GGAAAAGAAAAATCAAACTGATGATGCCAACAAGAAAGCAGCAGATGAAAGCAATAAGAATGGCA

                             *                      
        605 AGGAATATTCGTCCACGTCATCCATGCCCCAAAACAATCT
         66 AGGAATATTCGTCCACGCCATCCATGCCCCAAAACAATCT

             
        645 G
          1 G

        646 CAACCTTCCT


Statistics
Matches: 101,  Mismatches: 5, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
 105  101  1.00

ACGTcount: A:0.43, C:0.21, G:0.21, T:0.15


Consensus pattern (105 bp):   
GGAAAAGAAAAATCAAACTGATGATGCCAACAAGAAAGCAGCAGATGAAAGCAATAAGAATGGCA
AGGAATATTCGTCCACGCCATCCATGCCCCAAAACAATCT
Done.