Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16833

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 770

Length: 1284
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28


Found at i:47 original size:3 final size:3

Alignment explanation


    Indices: 41--82  Score: 57
    Period size: 3  Copynumber: 14.0  Consensus size: 3

         31 ATCTCTCTTG

                     *   *                              *          
         41 ACC ACC ATC ATC ACC ACC ACC ACC ACC ACC ACC GCC ACC ACC
          1 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC

         83 GTCTTAGCCT


Statistics
Matches: 35,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   3   35  1.00

ACGTcount: A:0.31, C:0.62, G:0.02, T:0.05


Consensus pattern (3 bp):   
ACC

Done.