Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20996

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 394

Length: 657
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27


Found at i:547 original size:18 final size:18

Alignment explanation


    Indices: 532--578  Score: 60
    Period size: 18  Copynumber: 2.6  Consensus size: 18

        522 GTCATCCATG

                              
        532 TATCCTCCACCATCCACA
          1 TATCCTCCACCATCCACA

                            *  
        550 TATCCTCCACC-TCCTGCA
          1 TATCCTCCACCATCC-ACA

              *        
        568 TACCCTCCACC
          1 TATCCTCCACC

        579 TCCCTTGCCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  17    3  0.12
  18   23  0.88

ACGTcount: A:0.21, C:0.53, G:0.02, T:0.23


Consensus pattern (18 bp):   
TATCCTCCACCATCCACA

Done.