Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24048

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 520

Length: 867
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30


Found at i:579 original size:24 final size:24

Alignment explanation


    Indices: 552--605  Score: 81
    Period size: 24  Copynumber: 2.2  Consensus size: 24

        542 TTTCTCCTAG

                               *    
        552 GGGAGCAAGAGGTGGTCCTTCAAT
          1 GGGAGCAAGAGGTGGTCCTCCAAT

                     *           *  
        576 GGGAGCAAGGGGTGGTCCTCCTAT
          1 GGGAGCAAGAGGTGGTCCTCCAAT

                  
        600 GGGAGC
          1 GGGAGC

        606 TTCAAATCGT


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.20, C:0.19, G:0.43, T:0.19


Consensus pattern (24 bp):   
GGGAGCAAGAGGTGGTCCTCCAAT
Done.