Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33500

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 288

Length: 481
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25


Found at i:67 original size:6 final size:6

Alignment explanation


    Indices: 43--81  Score: 60
    Period size: 6  Copynumber: 6.3  Consensus size: 6

         33 TCTTACTTTA

                            *                            
         43 CCCATTC CCCATC CTCATC CCCATC CCCATC CCCATC CC
          1 CCCA-TC CCCATC CCCATC CCCATC CCCATC CCCATC CC

         82 TTCTCATCCA


Statistics
Matches: 30,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
   6   26  0.87
   7    4  0.13

ACGTcount: A:0.15, C:0.64, G:0.00, T:0.21


Consensus pattern (6 bp):   
CCCATC

Done.