Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03863

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3057
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28


Found at i:431 original size:3 final size:3

Alignment explanation


    Indices: 423--464  Score: 84
    Period size: 3  Copynumber: 14.0  Consensus size: 3

        413 GTAGTGATTT

                                                                   
        423 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA

        465 AAAGGGTGAC


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   39  1.00

ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33


Consensus pattern (3 bp):   
TGA

Done.