Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21573

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1955
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.23


Found at i:312 original size:6 final size:6

Alignment explanation


    Indices: 301--358  Score: 116
    Period size: 6  Copynumber: 9.7  Consensus size: 6

        291 AGCATGTAAT

                                                                   
        301 GGAGAA GGAGAA GGAGAA GGAGAA GGAGAA GGAGAA GGAGAA GGAGAA
          1 GGAGAA GGAGAA GGAGAA GGAGAA GGAGAA GGAGAA GGAGAA GGAGAA

                       
        349 GGAGAA GGAG
          1 GGAGAA GGAG

        359 GAGAAGAAAC


Statistics
Matches: 52,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   52  1.00

ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00


Consensus pattern (6 bp):   
GGAGAA

Done.