Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05492

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 945

Length: 1575
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25


Found at i:793 original size:18 final size:18

Alignment explanation


    Indices: 770--804  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        760 AAGATAACAG

                      *       
        770 ATTGGGAAAGGAAGTTGA
          1 ATTGGGAAAGAAAGTTGA

                             
        788 ATTGGGAAAGAAAGTTG
          1 ATTGGGAAAGAAAGTTG

        805 GAAGGCATGA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.40, C:0.00, G:0.37, T:0.23


Consensus pattern (18 bp):   
ATTGGGAAAGAAAGTTGA
Done.