Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13471

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 532

Length: 888
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26


Found at i:221 original size:6 final size:6

Alignment explanation


    Indices: 210--236  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        200 GCGGATACGG

                                           
        210 CCCTTA CCCTTA CCCTTA CCCTTA CCC
          1 CCCTTA CCCTTA CCCTTA CCCTTA CCC

        237 GCCACCGGGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.15, C:0.56, G:0.00, T:0.30


Consensus pattern (6 bp):   
CCCTTA

Done.