Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14816

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 894

Length: 1490
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23


Found at i:497 original size:6 final size:6

Alignment explanation


    Indices: 486--511  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

        476 CCTTCTATTC

                                          
        486 CCAGCA CCAGCA CCAGCA CCAGCA CC
          1 CCAGCA CCAGCA CCAGCA CCAGCA CC

        512 GCCAGCGTCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.31, C:0.54, G:0.15, T:0.00


Consensus pattern (6 bp):   
CCAGCA

Done.