Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09464

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 556

Length: 927
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:79 original size:30 final size:30

Alignment explanation


    Indices: 45--106  Score: 124
    Period size: 30  Copynumber: 2.1  Consensus size: 30

         35 GTGGTAAATG

                                          
         45 TCAAACTGATAAGCTTTCTGAGGAAATTGT
          1 TCAAACTGATAAGCTTTCTGAGGAAATTGT

                                          
         75 TCAAACTGATAAGCTTTCTGAGGAAATTGT
          1 TCAAACTGATAAGCTTTCTGAGGAAATTGT

              
        105 TC
          1 TC

        107 TTGCCAAGAG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34


Consensus pattern (30 bp):   
TCAAACTGATAAGCTTTCTGAGGAAATTGT
Done.