Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10186

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 295

Length: 492
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26


Found at i:416 original size:3 final size:3

Alignment explanation


    Indices: 408--441  Score: 50
    Period size: 3  Copynumber: 11.3  Consensus size: 3

        398 TAAATGGAGT

                                          *     *        
        408 TGA TGA TGA TGA TGA TGA TGA TGG TGA CGA TGA T
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T

        442 AGTTGCAGAA


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.29, C:0.03, G:0.35, T:0.32


Consensus pattern (3 bp):   
TGA

Done.