Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35640

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 858

Length: 1431
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27


Found at i:183 original size:30 final size:30

Alignment explanation


    Indices: 147--222  Score: 152
    Period size: 30  Copynumber: 2.5  Consensus size: 30

        137 CTGCCTCCCT

                                          
        147 GCAGTATTATCCACCTTCACAACCGGAGCC
          1 GCAGTATTATCCACCTTCACAACCGGAGCC

                                          
        177 GCAGTATTATCCACCTTCACAACCGGAGCC
          1 GCAGTATTATCCACCTTCACAACCGGAGCC

                            
        207 GCAGTATTATCCACCT
          1 GCAGTATTATCCACCT

        223 CCTCAAAACC


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   46  1.00

ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22


Consensus pattern (30 bp):   
GCAGTATTATCCACCTTCACAACCGGAGCC
Done.