Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11884

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 354

Length: 591
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.22


Found at i:426 original size:3 final size:3

Alignment explanation


    Indices: 420--454  Score: 70
    Period size: 3  Copynumber: 11.7  Consensus size: 3

        410 ATGATAATAA

                                                          
        420 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CA
          1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CA

        455 TCTACAACAA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   32  1.00

ACGTcount: A:0.34, C:0.66, G:0.00, T:0.00


Consensus pattern (3 bp):   
CAC

Done.